Category Archives: Publications

Authors: Sonali Garg, Gayani Senevirathne, Nayana Wijayathilaka, Samadhan Phuge, Kaushik Deuti, Kelum Manamendra-Arachchi, Madhava Meegaskumbura, SD Biju

Journal: Zootaxa

Based on a recent molecular phylogenetic study, the South Asian microhylid genus Uperodon (subfamily Microhylinae) currently comprises of 12 valid species that are largely restricted to India and Sri Lanka. Considering the revised generic-level status of its various members, here we review the taxonomy of all known species in this genus and clarify their nomenclatural status and geographical distribution, by integrating evidence from genetics, adult and tadpole morphology, breeding ecology, and bioacoustics. Our molecular analyses of a mitochondrial 16S rRNA gene fragment combined with external and internal morphological studies also revealed a distinct new species in the genus. This species, formally described as Uperodon rohani sp. nov., is endemic to Sri Lanka and widely distributed at lower elevations in the island. For nomenclatural stability of various previously known members, the following actions are also undertaken: (1) redescription of the poorly-defined species Ramanella anamalaiensis Rao (= Uperodon anamalaiensis) and Hylaedactylus montanus Jerdon (= Uperodon montanus); (2) neotype designation for Ramanella anamalaiensis Rao (= Uperodon anamalaiensis), Ramanella minor Rao, Ramanella mormorata Rao (= Uperodon mormorata), and Ramanella triangularis rufeventrisRao; (3) lectotype designation for Callula variegata Stoliczka (= Uperodon variegatus); and (4) synonymization of Ramanella minor Rao with Uperodon anamalaiensis.

Read More >>

Authors: Yong Chang Jang, R.R.M.K.P. Ranatunga, Jin Yong Mok, Kyung Shin Kim, Su Yeon Hong, Young Rae Choi, A.J.M. Gunasekara

Journal: Marine Pollution Bulletin

This study provides the first assessment of marine debris washed ashore on 22 beaches along the coast of Sri Lanka. There was an average of 4.1 large (>25 mm) and 158 small (5–25 mm) pieces of debris per square meter of beach. Classified by use, packaging material (55%) dominated the debris, followed by consumer products (25%) and fishing gear (20%). In terms of materials, plastic was the greatest contributor (93%) to marine debris. Beaches near a river mouth or city and those with a barrier had greater debris accumulations. The east coast had significantly greater small debris density, possibly due to strong northeastern monsoon currents. Large spatial heterogeneity was observed in the amount of debris. Long-term monitoring is imperative to better understand the temporal changes in, and the pathways and possible management of, marine debris.

Read more >

Authors: Kosala Ayantha Sirisena, Steven Ramirez, Andrew Steele, Mihaela Glamoclija
Journal: Microbial Ecology

Lake Lucero is a gypsum-rich, hypersaline, ephemeral playa located on the southern part of the Alkali Flat at the White Sands National Monument (WSNM), New Mexico, USA. This modern playa setting provides a dynamic extreme environment that changes from a freshwater lake to a hypersaline dry desert during the year. We investigated the microbial diversity (bacteria, archaea, and microbial eukaryotes) of the Lake Lucero sediments using 16S- and 18S-based amplicon sequencing approach and explored the diversity patterns in different geochemical microenvironments. Our results indicated that similar microbial communities, in particular bacterial communities colonized, were remarkably consistent across our depth profiles. Therefore, these communities show a first-order relevance on the environmental conditions (moisture content, oxygen content, and mineral composition). We found that Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes, and Gemmatimonadetes were the major bacterial phyla, while Cyanobacteria were present in relatively low abundances and appeared only at the surface. Genus level assessment reflected that Truepera, Delftia, and Pseudomonas were the predominant bacterial genera across all samples. Euryarchaeota was the major archaeal phylum in all the samples, while Candidatus Halobonum and Candidatus Nitrososphaera were the main genera. Diatoms were the dominant eukaryotic group in surface samples and Fungi, Ciliophora, Metazoa, and Nematodes were the other major groups. As expected, metabolic inference indicated that aerobic microbial communities were near surface colonizers, with anaerobic communities dominating with increasing depth. We demonstrated that these microbial communities could be used to characterize unique geochemical microenvironments enabling us to extrapolate these results into other terrestrial and possibly extraterrestrial environments with comparable geochemical characteristics.

Authors: Manoj Wijesekara & Pathmalal Manage
Journal: Journal of Tropical Forestry and Environment

Cyanobacteria, highly diverse group of prokaryotes are recognized as a potent source of biologically active compounds with antiviral, antibacterial, antifungal, and anticancer properties.The aim of the present study was to screen antibacterial, antifungal and cytotoxic activities of intracellular secondary metabolites of freshwater cyanobacterium Oscillataria sp. Cyanobacterium Oscillatoria sp. was isolated from Senanayaka Samudraya reservoir (70 11’ 37.370N 810 31’ 47.130E), Sri Lanka.In vitro antibacterial and antifungal activity of Oscillatoria sp. was screened against Gram-positive Methicillin-resistant Staphylococcus aureus (MRSA) ATCC 25923, Bacillus anthracis and Gram-negative Pseudomonas aeruginosa (ATCC 25853), Salmonella typhi and Escherichia coli (ATCC 25922) and fungi, unicellular Candida albicans (ATCC 60192) and Candida tropicalis using agar disc diffusion method.The Minimum Inhibitory Concentrations (MIC), Minimum Bacteriocidal Concentration (MBC), Minimum Fungicidal Concentrations (MFC) and cytotoxic effects (brine shrimp bioassay) of Oscillatoria crude extract were determined. 10% and 60% of biomass was extracted with hexane and methanol respectively.Gas Chromatography-Mass Spectrometry (GC-MS) was used to identify compounds in the crude extract. The highest antibacterial and antifungal activity of crude extract were detectedin methanol extract against S.aureus (19 ± 2 mm)and C.albicans (10 ± 1 mm) within 24 hours wherein the hexane extract, antibacterial activity was detected only for S. aureus and mean diameter of inhibition zone was 11 ± 1mm within 24 hours.The lowest MIC of methanol extract against S. aureus wasfound as 156.25 μg/ml. The lowest MBC and MFC of methanol extract againstS. aureus and C.albicans were 0.63 mg/ml and 1.25mg/ml respectively. Lethal concentration, 50% of the crude extract against brine shrimp was recorded at 2.50 g/l, 1.25 g/l and 0.625 g/l for 6, 12, 24 hrs intervals respectively. GC-MS analysis revealed that the methanol crude extract of Oscillatoria sp. contains important fatty acid namely hexadecanoic acid methyl ester, methyl tetradecane and 13-tetradecanoic acid and n-hexane extract contains Bis (2-ethylhexyl hydroxypyridine oxide, 1 2-benzenedicarboxylic acid mono (2-ethylhexyl) ester, Phthalic acid 6-ethyl-3-Octyl heptyl ester and Phthalic acid dodecyl nonyl ester which may possess antibacterial and antifungal properties.

Read more >>